PublicationList:

Citations:

97: Zahran SA, Ali-Tammam M, Ali AE, Aziz RK, (2021). Compositional variation of the human fecal microbiome in relation to azo-reducing activity: a pilot study. Gut Pathog 13:58.
Abstract

96: Elkenawy NM, Youssef NH, Aziz RK, Amin MA, Yassin AS, (2021). Draft genome sequence of a prodigiosin-hyperproducing Serratia marcescens strain isolated from Cairo, Egypt. G3 (Bethesda) 11:.
Abstract

95: Krupovic M, Turner D, Morozova V, Dyall-Smith M, Oksanen HM, Edwards R, Dutilh BE, Lehman SM, Reyes A, Baquero DP, Sullivan MB, Uchiyama J, Nakavuma J, Barylski J, Young MJ, Du S, Alfenas-Zerbini P, Kushkina A, Kropinski AM, Kurtboke I, Brister JR, Lood C, Sarkar BL, Yigang T, Liu Y, Huang L, Wittmann J, Chanishvili N, van Zyl LJ, Rumnieks J, Mochizuki T, Jalasvuori M, Aziz RK, Lobocka M, Stedman KM, Shkoporov AN, Gillis A, Peng X, Enault F, Knezevic P, Lavigne R, Rhee SK, Cvirkaite-Krupovic V, Moraru C, Moreno Switt AI, Poranen MM, Millard A, Prangishvili D, Adriaenssens EM, (2021). Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021. Arch Virol 166:3239-3244.
Abstract

94: Speicher DJ, Aziz RK, (2021). Profiling the Human Oral Mycobiome in Tissue and Saliva Using ITS2 DNA Metabarcoding Compared to a Fungal-Specific Database. Methods Mol Biol 2327:253-269.
Abstract

93: Maina AN, Mwaura FB, Jumba M, Kiefts K, El-Din HTN, Aziz RK, (2021). Novel PhoH-encoding vibriophages with lytic activity against environmental Vibrio strains. Arch Microbiol 203:5321-5331.
Abstract

92: Moustafa A, Khalel RS, Aziz RK, (2021). Traces of SARS-CoV-2 RNA in Peripheral Blood Cells of Patients with COVID-19. OMICS 25:475-483.
Abstract

91: ElBanna SA, Moneib NA, Aziz RK, Samir R, (2021). Genomics-guided identification of a conserved CptBA-like toxin-antitoxin system in Acinetobacter baumannii. J Adv Res 30:159-170.
Abstract

90: Hashem YA, Abdelrahman KA, Aziz RK, (2021). Phenotype-Genotype Correlations and Distribution of Key Virulence Factors in Enterococcus faecalis Isolated from Patients with Urinary Tract Infections. Infect Drug Resist 14:1713-1723.
Abstract

89: Sallam IE, Abdelwareth A, Attia H, Aziz RK, Homsi MN, von Bergen M, Farag MA, (2021). Effect of Gut Microbiota Biotransformation on Dietary Tannins and Human Health Implications. Microorganisms 9:.
Abstract

88: Hemeda AA, Ahmad Mohamed A, Aziz RK, Abdel-Hakeem MS, Ali-Tammam M, (2021). Impact of IL10, MTP, SOD2, and APOE Gene Polymorphisms on the Severity of Liver Fibrosis Induced by HCV Genotype 4. Viruses 13:.
Abstract

87: Abdelsattar AS, Dawoud A, Makky S, Nofal R, Aziz RK, El-Shibiny A, (2021). Bacteriophages: from Isolation to Application Curr Pharm Biotechnol :.
Abstract

86: Soliman MS, AbdelFattah M, Aman SMN, Ibrahim LM, Aziz RK, (2021). A Gapless, Unambiguous RNA Metagenome-Assembled Genome Sequence of a Unique SARS-CoV-2 Variant Encoding Spike S813I and ORF1a A859V Substitutions. OMICS 25:123-128.
Abstract

85: Soliman MS, Soliman NS, El-Manakhly AR, ElBanna SA, Aziz RK, El-Kholy AA, (2020). Genomic Characterization of Methicillin-Resistant Staphylococcus aureus (MRSA) by High-Throughput Sequencing in a Tertiary Care Hospital. Genes (Basel) 11:.
Abstract

84: Nelson J, El-Gendy AO, Mansy MS, Ramadan MA, Aziz RK, (2020). The biosurfactants iturin, lichenysin and surfactin, from vaginally isolated lactobacilli, prevent biofilm formation by pathogenic Candida. FEMS Microbiol Lett 367:.
Abstract

83: Abdelsalam NA, Ramadan AT, ElRakaiby MT, Aziz RK, (2020). Toxicomicrobiomics: The Human Microbiome vs. Pharmaceutical, Dietary, and Environmental Xenobiotics. Front Pharmacol 11:390.
Abstract

82: Adriaenssens EM, Sullivan MB, Knezevic P, van Zyl LJ, Sarkar BL, Dutilh BE, Alfenas-Zerbini P, Lobocka M, Tong Y, Brister JR, Moreno Switt AI, Klumpp J, Aziz RK, Barylski J, Uchiyama J, Edwards RA, Kropinski AM, Petty NK, Clokie MRJ, Kushkina AI, Morozova VV, Duffy S, Gillis A, Rumnieks J, Kurtboke I, Chanishvili N, Goodridge L, Wittmann J, Lavigne R, Jang HB, Prangishvili D, Enault F, Turner D, Poranen MM, Oksanen HM, Krupovic M, (2020). Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee. Arch Virol 165:1253-1260.
Abstract

81: Ozdemir V, Arga KY, Aziz RK, Bayram M, Conley SN, Dandara C, Endrenyi L, Fisher E, Garvey CK, Hekim N, Kunej T, Sardas S, Von Schomberg R, Yassin AS, Yilmaz G, Wang W, (2020). Digging Deeper into Precision/Personalized Medicine: Cracking the Sugar Code, the Third Alphabet of Life, and Sociomateriality of the Cell. OMICS 24:62-80.
Abstract

80: Kashef MT, Aziz RK, (2020). Drug Factory Microbiome: Top Three Actionable Challenges and Prospects. OMICS 24:55-56.
Abstract

79: Aziz RK, Rizkallah MR, Saad R, ElRakaiby MT, (2020). Translating Pharmacomicrobiomics: Three Actionable Challenges/Prospects in 2020. OMICS 24:60-61.
Abstract

78: Davis JJ, Wattam AR, Aziz RK, Brettin T, Butler R, Butler RM, Chlenski P, Conrad N, Dickerman A, Dietrich EM, Gabbard JL, Gerdes S, Guard A, Kenyon RW, Machi D, Mao C, Murphy-Olson D, Nguyen M, Nordberg EK, Olsen GJ, Olson RD, Overbeek JC, Overbeek R, Parrello B, Pusch GD, Shukla M, Thomas C, VanOeffelen M, Vonstein V, Warren AS, Xia F, Xie D, Yoo H, Stevens R, (2020). The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. Nucleic Acids Res 48:D606-D612.
Abstract

77: ElRakaiby MT, Gamal-Eldin S, Amin MA, Aziz RK, (2019). Hospital Microbiome Variations As Analyzed by High-Throughput Sequencing. OMICS 23:426-438.
Abstract

76: Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, Diaz Munoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Munoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortes P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyoty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, OConnell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramirez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE, (2019). Global phylogeography and ancient evolution of the widespread human gut virus crAssphage. Nat Microbiol 4:1727-1736.
Abstract

75: Norsigian CJ, Attia H, Szubin R, Yassin AS, Palsson BO, Aziz RK, Monk JM, (2019). Comparative Genome-Scale Metabolic Modeling of Metallo-Beta-Lactamase-Producing Multidrug-Resistant Klebsiella pneumoniae Clinical Isolates. Front Cell Infect Microbiol 9:161.
Abstract

74: Hussein SH, Samir R, Aziz RK, Toama MA, (2019). Two putative MmpL homologs contribute to antimicrobial resistance and nephropathy of enterohemorrhagic E. coli O157:H7. Gut Pathog 11:15.
Abstract

73: Zahran SA, Ali-Tammam M, Hashem AM, Aziz RK, Ali AE, (2019). Azoreductase activity of dye-decolorizing bacteria isolated from the human gut microbiota. Sci Rep 9:5508.
Abstract

72: Ziko L, Saqr AA, Ouf A, Gimpel M, Aziz RK, Neubauer P, Siam R, (2019). Antibacterial and anticancer activities of orphan biosynthetic gene clusters from Atlantis II Red Sea brine pool. Microb Cell Fact 18:56.
Abstract

71: Ramadan AA, Abdelaziz NA, Amin MA, Aziz RK, (2019). Novel blaCTX-M variants and genotype-phenotype correlations among clinical isolates of extended spectrum beta lactamase-producing Escherichia coli. Sci Rep 9:4224.
Abstract

70: Attia H, Szubin R, Yassin AS, Monk JM, Aziz RK, (2019). Draft Genome Sequences of Four Metallo-Beta-Lactamase-Producing Multidrug-Resistant Klebsiella pneumoniae Clinical Isolates, Including Two Colistin-Resistant Strains, from Cairo, Egypt. Microbiol Resour Announc 8:.
Abstract

69: Aziz RK, (2018). Toxicomicrobiomics: Narrowing the Gap Between Environmental and Medicinal Toxicogenomics. OMICS 22:788-789.
Abstract

68: Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonte JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Paez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA, (2019). Minimum Information about an Uncultivated Virus Genome (MIUViG). Nat Biotechnol 37:29-37.
Abstract

67: Maged M, El Hosseiny A, Saadeldin MK, Aziz RK, Ramadan E, (2019). Thermal Stability of a Mercuric Reductase from the Red Sea Atlantis II Hot Brine Environment as Analyzed by Site-Directed Mutagenesis. Appl Environ Microbiol 85:.
Abstract

66: Aziz RK, Hegazy SM, Yasser R, Rizkallah MR, ElRakaiby MT, (2018). Drug pharmacomicrobiomics and toxicomicrobiomics: from scattered reports to systematic studies of drug-microbiome interactions. Expert Opin Drug Metab Toxicol 14:1043-1055.
Abstract

65: Al-Ghobashy MA, Kamal SM, El-Sayed GM, Attia AK, Nagy M, ElZeiny A, Elrakaiby MT, Nooh MM, Abbassi M, Aziz RK, (2018). Determination of voriconazole and co-administered drugs in plasma of pediatric cancer patients using UPLC-MS/MS: A key step towards personalized therapeutics. J Chromatogr B Analyt Technol Biomed Life Sci 1092:489-498.
Abstract

64: Aziz RK, (2018). Interview with Prof. Ramy K. Aziz, Cairo University. The Dawn of Pharmacomicrobiomics. OMICS 22:295-297.
Abstract

63: Safwat NA, Kashef MT, Aziz RK, Amer KF, Ramadan MA, (2018). Quercetin 3-O-glucoside recovered from the wild Egyptian Sahara plant, Euphorbia paralias L., inhibits glutamine synthetase and has antimycobacterial activity. Tuberculosis (Edinb) 108:106-113.
Abstract

62: Adriaenssens EM, Wittmann J, Kuhn JH, Turner D, Sullivan MB, Dutilh BE, Jang HB, van Zyl LJ, Klumpp J, Lobocka M, Moreno Switt AI, Rumnieks J, Edwards RA, Uchiyama J, Alfenas-Zerbini P, Petty NK, Kropinski AM, Barylski J, Gillis A, Clokie MRC, Prangishvili D, Lavigne R, Aziz RK, Duffy S, Krupovic M, Poranen MM, Knezevic P, Enault F, Tong Y, Oksanen HM, Rodney Brister J, (2018). Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee. Arch Virol 163:1125-1129.
Abstract

61: Akhter S, Aziz RK, Kashef MT, Ibrahim ES, Bailey B, Edwards RA, (2017). Kullback Leibler divergence in complete bacterial and phage genomes. PeerJ 5:e4026.
Abstract

60: McNair K, Aziz RK, Pusch GD, Overbeek R, Dutilh BE, Edwards R, (2018). Phage Genome Annotation Using the RAST Pipeline. Methods Mol Biol 1681:231-238.
Abstract

59: Aziz RK, Ackermann HW, Petty NK, Kropinski AM, (2018). Essential Steps in Characterizing Bacteriophages: Biology, Taxonomy, and Genome Analysis. Methods Mol Biol 1681:197-215.
Abstract

58: Antonopoulos DA, Assaf R, Aziz RK, Brettin T, Bun C, Conrad N, Davis JJ, Dietrich EM, Disz T, Gerdes S, Kenyon RW, Machi D, Mao C, Murphy-Olson DE, Nordberg EK, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Santerre J, Shukla M, Stevens RL, VanOeffelen M, Vonstein V, Warren AS, Wattam AR, Xia F, Yoo H, (2019). PATRIC as a unique resource for studying antimicrobial resistance. Brief Bioinform 20:1094-1102.
Abstract

57: Hamdy AM, El-Massry M, Kashef MT, Amin MA, Aziz RK, (2018). Toward the Drug Factory Microbiome: Microbial Community Variations in Antibiotic-Producing Clean Rooms. OMICS 22:133-144.
Abstract

56: Hashem YA, Amin HM, Essam TM, Yassin AS, Aziz RK, (2017). Biofilm formation in enterococci: genotype-phenotype correlations and inhibition by vancomycin. Sci Rep 7:5733.
Abstract

55: Aziz RK, Monk JM, Andrews KA, Nhan J, Khaw VL, Wong H, Palsson BO, Charusanti P, (2017). The aldehyde dehydrogenase, AldA, is essential for L-1,2-propanediol utilization in laboratory-evolved Escherichia coli. Microbiol Res 194:47-52.
Abstract

54: Elbehery AH, Aziz RK, Siam R, (2017). Insertion sequences enrichment in extreme Red sea brine pool vent. Extremophiles 21:271-282.
Abstract

53: Aly AM, Adel A, El-Gendy AO, Essam TM, Aziz RK, (2016). Gut microbiome alterations in patients with stage 4 hepatitis C. Gut Pathog 8:42.
Abstract

52: Adel M, Elbehery AH, Aziz SK, Aziz RK, Grossart HP, Siam R, (2016). Viruses-to-mobile genetic elements skew in the deep Atlantis II brine pool sediments. Sci Rep 6:32704.
Abstract

51: Bosi E, Monk JM, Aziz RK, Fondi M, Nizet V, Palsson BO, (2016). Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity. Proc Natl Acad Sci U S A 113:E3801-9.
Abstract

50: Elbehery AH, Aziz RK, Siam R, (2016). Antibiotic Resistome: Improving Detection and Quantification Accuracy for Comparative Metagenomics. OMICS 20:229-38.
Abstract

49: Aziz RK, Monk JM, Lewis RM, In Loh S, Mishra A, Abhay Nagle A, Satyanarayana C, Dhakshinamoorthy S, Luche M, Kitchen DB, Andrews KA, Fong NL, Li HJ, Palsson BO, Charusanti P, (2015). Systems biology-guided identification of synthetic lethal gene pairs and its potential use to discover antibiotic combinations. Sci Rep 5:16025.
Abstract

48: Aziz RK, Khaw VL, Monk JM, Brunk E, Lewis R, Loh SI, Mishra A, Nagle AA, Satyanarayana C, Dhakshinamoorthy S, Luche M, Kitchen DB, Andrews KA, Palsson BO, Charusanti P, (2015). Model-driven discovery of synergistic inhibitors against E. coli and S. enterica serovar Typhimurium targeting a novel synthetic lethal pair, aldA and prpC. Front Microbiol 6:958.
Abstract

47: Aziz RK, Khalifa MM, Sharaf RR, (2015). Contaminated water as a source of Helicobacter pylori infection: A review. J Adv Res 6:539-47.
Abstract

46: Aziz RK, Dwivedi B, Akhter S, Breitbart M, Edwards RA, (2015). Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes. Front Microbiol 6:381.
Abstract

45: Henningham A, Yamaguchi M, Aziz RK, Kuipers K, Buffalo CZ, Dahesh S, Choudhury B, Van Vleet J, Yamaguchi Y, Seymour LM, Ben Zakour NL, He L, Smith HV, Grimwood K, Beatson SA, Ghosh P, Walker MJ, Nizet V, Cole JN, (2014). Mutual exclusivity of hyaluronan and hyaluronidase in invasive group A Streptococcus. J Biol Chem 289:32303-32315.
Abstract

44: Latif H, Li HJ, Charusanti P, Palsson BO, Aziz RK, (2014). A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933. Genome Announc 2:.
Abstract

43: Dutilh BE, Cassman N, McNair K, Sanchez SE, Silva GG, Boling L, Barr JJ, Speth DR, Seguritan V, Aziz RK, Felts B, Dinsdale EA, Mokili JL, Edwards RA, (2014). A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes. Nat Commun 5:4498.
Abstract

42: van Sorge NM, Cole JN, Kuipers K, Henningham A, Aziz RK, Kasirer-Friede A, Lin L, Berends ETM, Davies MR, Dougan G, Zhang F, Dahesh S, Shaw L, Gin J, Cunningham M, Merriman JA, Hutter J, Lepenies B, Rooijakkers SHM, Malley R, Walker MJ, Shattil SJ, Schlievert PM, Choudhury B, Nizet V, (2014). The classical lancefield antigen of group a Streptococcus is a virulence determinant with implications for vaccine design. Cell Host Microbe 15:729-740.
Abstract

41: ElRakaiby M, Dutilh BE, Rizkallah MR, Boleij A, Cole JN, Aziz RK, (2014). Pharmacomicrobiomics: the impact of human microbiome variations on systems pharmacology and personalized therapeutics. OMICS 18:402-14.
Abstract

40: Monk JM, Charusanti P, Aziz RK, Lerman JA, Premyodhin N, Orth JD, Feist AM, Palsson BO, (2013). Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments. Proc Natl Acad Sci U S A 110:20338-43.
Abstract

39: Akhter S, Bailey BA, Salamon P, Aziz RK, Edwards RA, (2013). Applying Shannon's information theory to bacterial and phage genomes and metagenomes. Sci Rep 3:1033.
Abstract

38: Saad R, Rizkallah MR, Aziz RK, (2012). Gut Pharmacomicrobiomics: the tip of an iceberg of complex interactions between drugs and gut-associated microbes. Gut Pathog 4:16.
Abstract

37: Aziz RK, Devoid S, Disz T, Edwards RA, Henry CS, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Stevens RL, Vonstein V, Xia F, (2012). SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models. PLoS One 7:e48053.
Abstract

36: Cole JN, Aziz RK, Kuipers K, Timmer AM, Nizet V, van Sorge NM, (2012). A conserved UDP-glucose dehydrogenase encoded outside the hasABC operon contributes to capsule biogenesis in group A Streptococcus. J Bacteriol 194:6154-61.
Abstract

35: Maamary PG, Ben Zakour NL, Cole JN, Hollands A, Aziz RK, Barnett TC, Cork AJ, Henningham A, Sanderson-Smith M, McArthur JD, Venturini C, Gillen CM, Kirk JK, Johnson DR, Taylor WL, Kaplan EL, Kotb M, Nizet V, Beatson SA, Walker MJ, (2012). Tracing the evolutionary history of the pandemic group A streptococcal M1T1 clone. FASEB J 26:4675-84.
Abstract

34: Khouzam RN, Shaheen M, Aziz RK, Ibebuogu UN, (2012). The important role of inflammatory biomarkers pre and post bare-metal and drug-eluting stent implantation. Can J Cardiol 28:700-5.
Abstract

33: Akhter S, Aziz RK, Edwards RA, (2012). PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity Nucleic Acids Res 40:e126.
Abstract

32: Ozdemir V, Rosenblatt DS, Warnich L, Srivastava S, Tadmouri GO, Aziz RK, Reddy PJ, Manamperi A, Dove ES, Joly Y, Zawati MH, Hizel C, Yazan Y, John L, Vaast E, Ptolemy AS, Faraj SA, Kolker E, Cotton RG, (2011). Towards an Ecology of Collective Innovation: Human Variome Project (HVP), Rare Disease Consortium for Autosomal Loci (RaDiCAL) and Data-Enabled Life Sciences Alliance (DELSA). Curr Pharmacogenomics Person Med 9:243-251.
Abstract

31: Ozdemir V, Armengaud J, Dube L, Aziz RK, Knoppers BM, (2010). Nutriproteomics and Proteogenomics: Cultivating Two Novel Hybrid Fields of Personalized Medicine with Added Societal Value. Curr Pharmacogenomics Person Med 8:240-244.
Abstract

30: Maamary PG, Sanderson-Smith ML, Aziz RK, Hollands A, Cole JN, McKay FC, McArthur JD, Kirk JK, Cork AJ, Keefe RJ, Kansal RG, Sun H, Taylor WL, Chhatwal GS, Ginsburg D, Nizet V, Kotb M, Walker MJ, (2010). Parameters governing invasive disease propensity of non-M1 serotype group A streptococci. J Innate Immun 2:596-606.
Abstract

29: Aziz RK, Kansal R, Aronow BJ, Taylor WL, Rowe SL, Kubal M, Chhatwal GS, Walker MJ, Kotb M, (2010). Microevolution of group A streptococci in vivo: capturing regulatory networks engaged in sociomicrobiology, niche adaptation, and hypervirulence. PLoS One 5:e9798.
Abstract

28: Aziz RK, Nizet V, (2010). Pathogen microevolution in high resolution. Sci Transl Med 2:16ps4.
Abstract

27: Khalifa MM, Sharaf RR, Aziz RK, (2010). Helicobacter pylori: a poor man's gut pathogen? Gut Pathog 2:2.
Abstract

26: Aziz RK, Breitbart M, Edwards RA, (2010). Transposases are the most abundant, most ubiquitous genes in nature. Nucleic Acids Res 38:4207-17.
Abstract

25: Kansal RG, Datta V, Aziz RK, Abdeltawab NF, Rowe S, Kotb M, (2010). Dissection of the molecular basis for hypervirulence of an in vivo-selected phenotype of the widely disseminated M1T1 strain of group A Streptococcus bacteria. J Infect Dis 201:855-65.
Abstract

24: Aziz RK, (2009). A hundred-year-old insight into the gut microbiome! Gut Pathog 1:21.
Abstract

23: Milani CJE, Aziz RK, Locke JB, Dahesh S, Nizet V, Buchanan JT, (2010). The novel polysaccharide deacetylase homologue Pdi contributes to virulence of the aquatic pathogen Streptococcus iniae. Microbiology (Reading) 156:543-554.
Abstract

22: Khouzam RN, Aziz RK, (2009). A case report: can altitude change blood pressure that much? J Clin Hypertens (Greenwich) 11:498-9.
Abstract

21: McNeil LK, Aziz RK, (2009). In silico Reconstruction of the Metabolic and Pathogenic Potential of Bacterial Genomes Using Subsystems. Genome Dyn 6:21-34.
Abstract

20: Aziz RK, (2009). The case for biocentric microbiology. Gut Pathog 1:16.
Abstract

19: Cox KH, Ruiz-Bustos E, Courtney HS, Dale JB, Pence MA, Nizet V, Aziz RK, Gerling I, Price SM, Hasty DL, (2009). Inactivation of DltA modulates virulence factor expression in Streptococcus pyogenes. PLoS One 4:e5366.
Abstract

18: Hollands A, Aziz RK, Kansal R, Kotb M, Nizet V, Walker MJ, (2008). A naturally occurring mutation in ropB suppresses SpeB expression and reduces M1T1 group A streptococcal systemic virulence. PLoS One 3:e4102.
Abstract

17: Kotb M, Fathey N, Aziz R, Rowe S, Williams RW, Lu L, (2008). Unbiased forward genetics and systems biology approaches to understanding how gene-environment interactions work to predict susceptibility and outcomes of infections. Novartis Found Symp 293:156-65; discussion 165-7, 181-3.
Abstract

16: Aziz RK, Kotb M, (2008). Rise and persistence of global M1T1 clone of Streptococcus pyogenes. Emerg Infect Dis 14:1511-7.
Abstract

15: Locke JB, Aziz RK, Vicknair MR, Nizet V, Buchanan JT, (2008). Streptococcus iniae M-like protein contributes to virulence in fish and is a target for live attenuated vaccine development. PLoS One 3:e2824.
Abstract

14: Abdeltawab NF, Aziz RK, Kansal R, Rowe SL, Su Y, Gardner L, Brannen C, Nooh MM, Attia RR, Abdelsamed HA, Taylor WL, Lu L, Williams RW, Kotb M, (2008). An unbiased systems genetics approach to mapping genetic loci modulating susceptibility to severe streptococcal sepsis. PLoS Pathog 4:e1000042.
Abstract

13: Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O, (2008). The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75.
Abstract

12: Arthur JC, Lich JD, Aziz RK, Kotb M, Ting JP, (2007). Heat shock protein 90 associates with monarch-1 and regulates its ability to promote degradation of NF-kappaB-inducing kinase. J Immunol 179:6291-6.
Abstract

11: Walker MJ, Hollands A, Sanderson-Smith ML, Cole JN, Kirk JK, Henningham A, McArthur JD, Dinkla K, Aziz RK, Kansal RG, Simpson AJ, Buchanan JT, Chhatwal GS, Kotb M, Nizet V, (2007). DNase Sda1 provides selection pressure for a switch to invasive group A streptococcal infection. Nat Med 13:981-5.
Abstract

10: Aziz RK, Kansal R, Abdeltawab NF, Rowe SL, Su Y, Carrigan D, Nooh MM, Attia RR, Brannen C, Gardner LA, Lu L, Williams RW, Kotb M, (2007). Susceptibility to severe Streptococcal sepsis: use of a large set of isogenic mouse lines to study genetic and environmental factors. Genes Immun 8:404-15.
Abstract

9: McNeil LK, Reich C, Aziz RK, Bartels D, Cohoon M, Disz T, Edwards RA, Gerdes S, Hwang K, Kubal M, Margaryan GR, Meyer F, Mihalo W, Olsen GJ, Olson R, Osterman A, Paarmann D, Paczian T, Parrello B, Pusch GD, Rodionov DA, Shi X, Vassieva O, Vonstein V, Zagnitko O, Xia F, Zinner J, Overbeek R, Stevens R, (2007). The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. Nucleic Acids Res 35:D347-53.
Abstract

8: Kwinn LA, Khosravi A, Aziz RK, Timmer AM, Doran KS, Kotb M, Nizet V, (2007). Genetic characterization and virulence role of the RALP3/LSA locus upstream of the streptolysin s operon in invasive M1T1 Group A Streptococcus. J Bacteriol 189:1322-9.
Abstract

7: Nooh MM, Aziz RK, Kotb M, Eroshkin A, Chuang WJ, Proft T, Kansal R, (2006). Streptococcal mitogenic exotoxin, SmeZ, is the most susceptible M1T1 streptococcal superantigen to degradation by the streptococcal cysteine protease, SpeB. J Biol Chem 281:35281-8.
Abstract

6: Buchanan JT, Simpson AJ, Aziz RK, Liu GY, Kristian SA, Kotb M, Feramisco J, Nizet V, (2006). DNase expression allows the pathogen group A Streptococcus to escape killing in neutrophil extracellular traps. Curr Biol 16:396-400.
Abstract

5: Kansal RG, Aziz RK, Kotb M, (2005). Modulation of expression of superantigens by human transferrin and lactoferrin: a novel mechanism in host-Streptococcus interactions. J Infect Dis 191:2121-9.
Abstract

4: Aziz RK, Edwards RA, Taylor WW, Low DE, McGeer A, Kotb M, (2005). Mosaic prophages with horizontally acquired genes account for the emergence and diversification of the globally disseminated M1T1 clone of Streptococcus pyogenes. J Bacteriol 187:3311-8.
Abstract

3: Aziz RK, Ismail SA, Park HW, Kotb M, (2004). Post-proteomic identification of a novel phage-encoded streptodornase, Sda1, in invasive M1T1 Streptococcus pyogenes. Mol Microbiol 54:184-97.
Abstract

2: Aziz RK, Pabst MJ, Jeng A, Kansal R, Low DE, Nizet V, Kotb M, (2004). Invasive M1T1 group A Streptococcus undergoes a phase-shift in vivo to prevent proteolytic degradation of multiple virulence factors by SpeB. Mol Microbiol 51:123-34.
Abstract

1: Kazmi SU, Kansal R, Aziz RK, Hooshdaran M, Norrby-Teglund A, Low DE, Halim AB, Kotb M, (2001). Reciprocal, temporal expression of SpeA and SpeB by invasive M1T1 group a streptococcal isolates in vivo. Infect Immun 69:4988-95.
Abstract

Journals

Appl Environ Microbiol (n=1)
Arch Microbiol (n=1)
Arch Virol (n=3)
BMC Genomics (n=1)
Brief Bioinform (n=1)
Can J Cardiol (n=1)
Cell Host Microbe (n=1)
Curr Biol (n=1)
Curr Pharm Biotechnol (n=1)
Curr Pharmacogenomics Person Med (n=2)
Emerg Infect Dis (n=1)
Expert Opin Drug Metab Toxicol (n=1)
Extremophiles (n=1)
FASEB J (n=1)
FEMS Microbiol Lett (n=1)
Front Cell Infect Microbiol (n=1)
Front Microbiol (n=2)
Front Pharmacol (n=1)
G3 (Bethesda) (n=1)
Genes (Basel) (n=1)
Genes Immun (n=1)
Genome Announc (n=1)
Genome Dyn (n=1)
Gut Pathog (n=7)
Infect Drug Resist (n=1)
Infect Immun (n=1)
J Adv Res (n=2)
J Bacteriol (n=3)
J Biol Chem (n=2)
J Chromatogr B Analyt Technol Biomed Life Sci (n=1)
J Clin Hypertens (Greenwich) (n=1)
J Immunol (n=1)
J Infect Dis (n=2)
J Innate Immun (n=1)
Methods Mol Biol (n=3)
Microb Cell Fact (n=1)
Microbiol Res (n=1)
Microbiol Resour Announc (n=1)
Microbiology (Reading) (n=1)
Microorganisms (n=1)
Mol Microbiol (n=2)
Nat Biotechnol (n=1)
Nat Commun (n=1)
Nat Med (n=1)
Nat Microbiol (n=1)
Novartis Found Symp (n=1)
Nucleic Acids Res (n=4)
OMICS (n=11)
PLoS One (n=5)
PLoS Pathog (n=1)
PeerJ (n=1)
Proc Natl Acad Sci U S A (n=2)
Sci Rep (n=6)
Sci Transl Med (n=1)
Tuberculosis (Edinb) (n=1)
Viruses (n=1)

Years

2001 (n=1)
2004 (n=2)
2005 (n=2)
2006 (n=2)
2007 (n=5)
2008 (n=6)
2009 (n=5)
2010 (n=8)
2011 (n=1)
2012 (n=6)
2013 (n=2)
2014 (n=5)
2015 (n=4)
2016 (n=4)
2017 (n=4)
2018 (n=9)
2019 (n=11)
2020 (n=8)
2021 (n=12)

Author Cloud

Aarestrup FM(1), Abbassi M(1), Abdel-Hakeem MS(1), AbdelFattah M(1), Abdelaziz NA(1), Abdelrahman KA(1), Abdelsalam NA(1), Abdelsamed HA(1), Abdelsattar AS(1), Abdeltawab NF(3), Abdelwareth A(1), Abhay Nagle A(1), Ackermann HW(1), Adel A(1), Adel M(1), Adriaenssens EM(4), Ahmad Mohamed A(1), Ahmadov G(1), Akhter S(4), Al-Ghobashy MA(1), Alassaf A(1), Alfenas-Zerbini P(3), Ali AE(2), Ali-Tammam M(3), Allen LZ(1), Aly AM(1), Aman SMN(1), Amer KF(1), Amid C(1), Amin HM(1), Amin MA(4), Andrews KA(3), Anton J(1), Antonopoulos DA(1), Arga KY(1), Armengaud J(1), Aronow BJ(1), Arthur JC(1), Asangba A(1), Assaf R(1), Attia AK(1), Attia H(3), Attia RR(2), Aziz R(1), Aziz RK(96), Aziz SK(1), Bailey B(1), Bailey BA(1), Baquero DP(1), Barnett TC(1), Barr JJ(2), Bartels D(2), Barylski J(3), Bayram M(1), Beatson SA(2), Ben Zakour NL(2), Berends ETM(1), Best AA(1), Bibby K(1), Billings EK(1), Boleij A(1), Boling L(1), Bordenstein SR(1), Bork P(1), Bosi E(1), Brannen C(2), Breitbart M(3), Brettin T(2), Brister JR(3), Brouns SJJ(1), Brunk E(1), Buchanan JT(4), Buffalo CZ(1), Bun C(1), Butler R(1), Butler RM(1), Cantu VA(1), Carlton JM(1), Carrigan D(1), Cassman N(1), Cazares A(1), Cazares D(1), Chanishvili N(2), Charusanti P(5), Chhatwal GS(3), Chlenski P(1), Cho GS(1), Choudhury B(2), Chuang WJ(1), Cinek O(1), Clokie MRC(1), Clokie MRJ(1), Cochrane GR(1), Cohoon M(1), Cole JN(7), Condeff T(1), Conley SN(1), Conrad N(2), Cork AJ(2), Cortes P(1), Cotton RG(1), Courtney HS(1), Cox KH(1), Cranfield M(1), Cuevas DA(1), Cunningham M(1), Cvirkaite-Krupovic V(1), Dahesh S(3), Dale JB(1), Daly RA(1), Dandara C(1), Datta V(1), Davies MR(1), Davis JJ(2), Dawoud A(1), De la Iglesia R(1), DeJongh M(1), Decewicz P(1), Desnues C(2), Devoid S(1), Dhakshinamoorthy S(2), Diaz Munoz SL(1), Dickerman A(1), Dietrich EM(2), Dinkla K(1), Dinsdale EA(2), Disz T(4), Doane MP(1), Dominy NJ(1), Doran KS(1), Dougan G(1), Dove ES(1), Du S(1), Dube L(1), Duffy S(2), Duhaime MB(1), Dutilh BE(8), Dwivedi B(1), Dyall-Smith M(1), Dziewit L(1), Edwards R(2), Edwards RA(13), El Hosseiny A(1), El-Din HTN(1), El-Gendy AO(2), El-Kholy AA(1), El-Manakhly AR(1), El-Massry M(1), El-Sayed GM(1), El-Shibiny A(1), ElBanna SA(2), ElRakaiby M(1), ElRakaiby MT(4), ElZeiny A(1), Elbehery AH(3), Elkenawy NM(1), Eloe-Fadrosh EA(1), Elrakaiby MT(1), Elwasila BM(1), Emerson JB(1), Enault F(4), Endrenyi L(1), Eren AM(1), Eroshkin A(1), Essam TM(2), Farag MA(1), Faraj SA(1), Fathey N(1), Feist AM(1), Felts B(1), Feramisco J(1), Fineran PC(1), Fisher E(1), Fondi M(1), Fong NL(1), Formsma K(1), Franz C(1), Fu J(1), Fuhrman JA(1), Gabbard JL(1), Gamal-Eldin S(1), Garcia-Aljaro C(1), Gardner L(1), Gardner LA(1), Garvey CK(1), Gerdes S(4), Gerling I(1), Ghedin E(1), Ghosh P(1), Gillen CM(1), Gillis A(3), Gimpel M(1), Gin J(1), Ginsburg D(1), Glass EM(1), Goodridge L(1), Grimwood K(1), Grossart HP(1), Guard A(1), Gulino KM(1), Haggerty JM(1), Halim AB(1), Hamdy AM(1), Hashem AM(1), Hashem YA(2), Hasty DL(1), He L(1), Head SR(1), Hegazy SM(1), Hekim N(1), Hemeda AA(1), Hendriksen RS(1), Henningham A(4), Henry CS(1), Hill C(1), Hingamp P(1), Hizel C(1), Hollands A(4), Homsi MN(1), Hooshdaran M(1), Huang L(1), Hugenholtz P(1), Hurwitz BL(1), Hussein SH(1), Hutter J(1), Hwang K(1), Hyoty H(1), Ibebuogu UN(1), Ibrahim ES(1), Ibrahim LM(1), Ilina EN(1), In Loh S(1), Irwin MT(1), Ismail SA(1), Ivanova NN(1), Jalasvuori M(1), Jang HB(2), Jeffries TC(1), Jeng A(1), Jofre J(1), John L(1), Johnson DR(1), Joly Y(1), Jumba M(1), Junge RE(1), Kamal SM(1), Kansal R(7), Kansal RG(4), Kaplan EL(1), Kashef MT(4), Kasirer-Friede A(1), Kazmi SU(1), Keefe RJ(1), Kelley ST(1), Kenyon RW(2), Khalel RS(1), Khalifa MM(2), Khan Mirzaei M(1), Khaw VL(2), Khosravi A(1), Khouzam RN(2), Kiefts K(1), Kirk JK(3), Kitchen DB(2), Klumpp J(2), Knezevic P(3), Knoppers BM(1), Kolker E(1), Koonin EV(1), Kotb M(19), Kowalewski M(1), Kristian SA(1), Kropinski AM(5), Krupovic M(4), Kubal M(3), Kuhn JH(2), Kuipers K(3), Kumaresan D(1), Kunej T(1), Kurilshikov A(1), Kurtboke I(2), Kushkina A(1), Kushkina AI(1), Kwinn LA(1), Kyrpides NC(1), Labonte JM(1), Latif H(1), Lavigne R(5), Lee KB(1), Lehman SM(1), Leigh SR(1), Lepenies B(1), Lerman JA(1), Levi K(1), Lewis R(1), Lewis RM(1), Li HJ(2), Lich JD(1), Lin L(1), Lipson D(1), Lisitsyna ES(1), Liu GY(1), Liu Y(1), Llagostera M(1), Lobocka M(3), Locke JB(2), Loh SI(1), Lood C(1), Low DE(3), Lu L(3), Luche M(2), Maamary PG(2), Machi D(2), Maged M(1), Maina AN(1), Makky S(1), Malley R(1), Malmstrom RR(1), Manamperi A(1), Mansy MS(1), Mao C(2), Margaryan GR(1), Maritz JM(1), Marr LC(1), Martinez-Garcia M(1), Mazankova K(1), McArthur JD(3), McCann A(1), McCarthy DT(1), McGeer A(1), McKay FC(1), McNair K(3), McNeil LK(3), Merriman JA(1), Meyer F(2), Mihalo W(1), Milani CJE(1), Millard A(1), Mishra A(2), Mizrachi IK(1), Mochizuki T(1), Mokili JL(1), Molshanski-Mor S(1), Moneib NA(1), Monk JM(7), Monteiro S(1), Moraru C(1), Moreira-Grez B(1), Moreno Switt AI(3), Morozova V(1), Morozova VV(1), Morris M(1), Moustafa A(1), Mugisha L(1), Muniesa M(1), Murphy-Olson D(1), Murphy-Olson DE(1), Mwaura FB(1), Nagle AA(1), Nagy M(1), Nakavuma J(1), Nelson J(1), Neubauer P(1), Neve H(1), Nguyen M(1), Nguyen NP(1), Nhan J(1), Nigro OD(1), Nilsson AS(1), Nizet V(15), Nobrega FL(1), Nofal R(1), Nooh MM(4), Nordberg EK(2), Norman HM(1), Norrby-Teglund A(1), Norsigian CJ(1), OConnell T(1), Odeh R(1), Ogata H(1), Ohaeri M(1), Oksanen HM(3), Oliver A(1), Olsen GJ(5), Olson R(4), Olson RD(1), Orth JD(1), Osterman A(1), Osterman AL(1), Ouf A(1), Overbeek JC(1), Overbeek R(5), Overbeek RA(1), Ozdemir V(3), Paarmann D(2), Pabst MJ(1), Paczian T(2), Paez-Espino D(1), Palsson BO(7), Park HW(1), Parrello B(5), Pence MA(1), Peng X(1), Petit MA(1), Petty NK(3), Piuri M(1), Poranen MM(3), Prangishvili D(3), Premyodhin N(1), Price SM(1), Proft T(1), Prussin Ii AJ(1), Ptolemy AS(1), Pusch GD(6), Putonti C(1), Qimron U(1), Quan ZX(1), Rainetova P(1), Ramadan AA(1), Ramadan AT(1), Ramadan E(1), Ramadan MA(2), Ramirez-Rojas A(1), Rattei T(1), Raya R(1), Reasor K(1), Reddy PJ(1), Reich C(2), Reyes A(2), Reyes Munoz A(1), Rhee SK(1), Rice GAO(1), Rizkallah MR(4), Rodionov DA(1), Rodney Brister J(1), Rodriguez-Valera F(1), Rooijakkers SHM(1), Rosario K(1), Rosenblatt DS(1), Rossi A(1), Roux S(1), Rowe S(2), Rowe SL(3), Ruiz-Bustos E(1), Rumnieks J(3), Saad R(2), Saadeldin MK(1), Safwat NA(1), Salamon P(1), Sallam IE(1), Samir R(2), Sanchez SE(1), Sanderson-Smith M(1), Sanderson-Smith ML(2), Santerre J(1), Santos R(1), Saqr AA(1), Sardas S(1), Sarkar BL(2), Satyanarayana C(2), Schlievert PM(1), Schriml L(1), Schulz F(1), Seguritan V(1), Seymour LM(1), Shaheen M(1), Sharaf RR(2), Shattil SJ(1), Shaw L(1), Shi X(1), Shimashita J(1), Shkoporov AN(1), Shukla M(2), Siam R(4), Silva GG(1), Simpson AJ(2), Smith HV(1), Soliman MS(2), Soliman NS(1), Speicher DJ(1), Speth DR(1), Srivastava S(1), Stachler EN(1), Stedman KM(1), Stene LC(1), Stevens R(3), Stevens RL(2), Steward GF(1), Strain R(1), Stumpf R(1), Su Y(2), Sullivan MB(4), Sun H(1), Sunagawa S(1), Suttle CA(1), Szubin R(2), Tadmouri GO(1), Tapia G(1), Taylor WL(4), Taylor WW(1), Temperton B(1), Thomas C(1), Thurber RV(1), Timmer AM(2), Ting JP(1), Toama MA(1), Tong Y(2), Torres PJ(1), Trefault N(1), Tringe SG(1), Turner D(3), Twaddle A(1), Tyakht AV(1), Uchiyama J(3), Ugochi Ibekwe M(1), Vaast E(1), Van Vleet J(1), VanOeffelen M(2), Varsani A(1), Vassieva O(2), Vega AA(1), Venturini C(1), Vicknair MR(1), Villagra N(1), Vinuesa P(1), Von Schomberg R(1), Vonstein V(5), Wagemans J(1), Walker MJ(7), Wandro S(1), Wang W(1), Warnich L(1), Warren AS(2), Wattam AR(2), Webster NS(1), White B(1), Whiteley A(1), Whiteson KL(2), Wijmenga C(1), Wilhelm SW(1), Wilke A(1), Williams RW(3), Wittmann J(3), Wommack KE(1), Wong H(1), Woyke T(1), Wrighton KC(1), Xia F(4), Xie D(1), Yamaguchi M(1), Yamaguchi Y(1), Yasser R(1), Yassin AS(5), Yazan Y(1), Yigang T(1), Yilmaz G(1), Yilmaz P(1), Yoo H(2), Yoshida T(1), Young MJ(2), Youssef NH(1), Yutin N(1), Zagnitko O(2), Zahran SA(2), Zambrano MM(1), Zawati MH(1), Zhang F(1), Zhernakova A(1), Ziko L(1), Zinner J(1), Zschach H(1), de Jonge PA(1), van Sorge NM(2), van Zyl LJ(3), von Bergen M(1),

Mesh Cloud

Acetylglucosamine(1), Acetylglucosamine/immunology(1), Acetylglucosamine/immunology/metabolism(1), Actins(1), Actins/pharmacology(1), Adaptation, Biological(1), Adaptation, Biological/genetics(1), Adaptation, Physiological(2), Adaptation, Physiological/physiology(1), Adhesins, Bacterial(1), Adhesins, Bacterial/metabolism(1), Adolescent(1), Adult(2), Aged(1), Aldehyde Dehydrogenase(1), Aldehyde Dehydrogenase/genetics(1), Aldehyde Dehydrogenase/genetics/metabolism(1), Algorithms(3), Alleles(2), Altitude(1), Amaranth Dye(1), Amaranth Dye/chemistry(1), Amidohydrolases(1), Amidohydrolases/genetics(1), Amidohydrolases/genetics/physiology(1), Amino Acid Motifs(2), Amino Acid Sequence(7), Amino Acid Substitution(1), Animals(21), Anti-Bacterial Agents(8), Anti-Bacterial Agents/biosynthesis(1), Anti-Bacterial Agents/chemical synthesis(1), Anti-Bacterial Agents/chemical synthesis/pharmacology(1), Anti-Bacterial Agents/pharmacology(5), Anti-Infective Agents(2), Anti-Infective Agents/pharmacology(2), Anti-Infective Agents/pharmacology/therapeutic use(1), Antibodies, Bacterial(1), Antibodies, Bacterial/immunology(1), Antigens, Bacterial(4), Antigens, Bacterial/biosynthesis(1), Antigens, Bacterial/chemistry(1), Antigens, Bacterial/chemistry/metabolism(1), Antigens, Bacterial/genetics(2), Antigens, Bacterial/genetics/metabolism(2), Antineoplastic Agents(2), Antineoplastic Agents/blood(1), Antineoplastic Agents/blood/pharmacokinetics/therapeutic use(1), Antitubercular Agents(1), Antitubercular Agents/chemistry(1), Antitubercular Agents/chemistry/isolation & purification/pharmacology(1), Apolipoproteins E(1), Apolipoproteins E/genetics(1), Apoproteins(1), Apoproteins/physiology(1), Archaea(1), Archaea/virology(1), Archaeal Viruses(2), Archaeal Viruses/classification(2), Azo Compounds(1), Azo Compounds/chemistry(1), Bacillus cereus(1), Bacillus cereus/enzymology(1), Bacillus cereus/enzymology/isolation & purification(1), Bacteremia(2), Bacteremia/etiology(1), Bacteremia/etiology/genetics(1), Bacteria(6), Bacteria/classification(1), Bacteria/classification/enzymology/isolation & purification(1), Bacteria/drug effects(1), Bacteria/drug effects/metabolism/pathogenicity(1), Bacteria/enzymology(1), Bacteria/enzymology/genetics/isolation & purification(1), Bacteria/genetics(2), Bacteria/virology(1), Bacterial Adhesion(1), Bacterial Capsules(2), Bacterial Capsules/metabolism(2), Bacterial Outer Membrane Proteins(1), Bacterial Outer Membrane Proteins/genetics(1), Bacterial Outer Membrane Proteins/genetics/metabolism(1), Bacterial Proteins(19), Bacterial Proteins/antagonists & inhibitors(1), Bacterial Proteins/antagonists & inhibitors/chemistry/metabolism(1), Bacterial Proteins/biosynthesis(3), Bacterial Proteins/biosynthesis/genetics(1), Bacterial Proteins/chemistry(2), Bacterial Proteins/chemistry/genetics/metabolism(2), Bacterial Proteins/genetics(9), Bacterial Proteins/genetics/immunology/metabolism(1), Bacterial Proteins/genetics/metabolism(5), Bacterial Proteins/genetics/physiology(1), Bacterial Proteins/metabolism(3), Bacterial Toxins(3), Bacterial Toxins/biosynthesis(1), Bacterial Toxins/chemistry(1), Bacterial Toxins/chemistry/metabolism(1), Bacterial Toxins/genetics(1), Bacteriolysis(1), Bacteriophages(7), Bacteriophages/classification(4), Bacteriophages/classification/genetics(2), Bacteriophages/genetics(3), Bacteriophages/genetics/isolation & purification(1), Bacteroides(1), Bacteroides/virology(1), Bacteroidetes(1), Bacteroidetes/classification(1), Bacteroidetes/classification/genetics/virology(1), Base Composition(2), Base Sequence(7), Bass(1), Bass/blood(1), Bass/blood/microbiology(1), Bias(1), Biodiversity(2), Biofilms(2), Biofilms/drug effects(2), Biofilms/drug effects/growth & development(1), Biological Coevolution(1), Biological Evolution(2), Biomarkers(2), Biomarkers/blood(1), Blood Bactericidal Activity(2), Bronchoalveolar Lavage Fluid(1), Bronchoalveolar Lavage Fluid/virology(1), COVID-19(2), COVID-19/diagnosis(1), COVID-19/diagnosis/epidemiology/virology(1), COVID-19/pathology(1), COVID-19/pathology/virology(1), Caenorhabditis elegans(1), Caenorhabditis elegans/genetics(1), Candida(1), Candida/drug effects(1), Carbohydrates(1), Carbohydrates/immunology(1), Carrier Proteins(1), Carrier Proteins/genetics(1), Carrier Proteins/genetics/metabolism(1), Cathelicidins(1), Cathelicidins/pharmacology(1), Cattle(1), Cell Line(3), Cell Membrane(1), Cell Membrane/microbiology(1), Cell Survival(2), Cell Wall(1), Cell Wall/metabolism(1), Cells, Cultured(2), Chickens(1), Chickens/genetics(1), Child(1), Chromatography, High Pressure Liquid(1), Chromatography, High Pressure Liquid/methods(1), Chromosome Mapping(1), Chromosome Mapping/methods(1), Classification(1), Classification/methods(1), Cloning, Molecular(2), Cloning, Molecular/methods(1), Clustered Regularly Interspaced Short Palindromic Repeats(1), Codon(1), Cohort Studies(1), Colistin(1), Colistin/pharmacology(1), Computational Biology(12), Computational Biology/methods(7), Computational Biology/methods/trends(1), Computer Simulation(1), Computing Methodologies(1), Coronary Restenosis(1), Coronary Restenosis/blood(1), Coronary Restenosis/blood/epidemiology/prevention & control(1), Coronavirus Papain-Like Proteases(1), Coronavirus Papain-Like Proteases/genetics(1), Cross Infection(1), Cross Infection/epidemiology(1), Cross Infection/epidemiology/microbiology(1), Culture Media(1), Cysteine Endopeptidases(5), Cysteine Endopeptidases/biosynthesis(2), Cysteine Endopeptidases/biosynthesis/genetics(1), Cysteine Endopeptidases/genetics(2), Cysteine Endopeptidases/genetics/isolation & purification/metabolism(1), Cysteine Endopeptidases/genetics/metabolism(1), Cysteine Endopeptidases/metabolism(1), DNA Mutational Analysis(1), DNA Primers(1), DNA Primers/genetics(1), DNA Transposable Elements(1), DNA, Bacterial(5), DNA, Bacterial/analysis(1), DNA, Bacterial/chemistry(2), DNA, Bacterial/genetics(2), DNA, 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